I'm coming to this a little late, but this doesn't look like a cross-bolted block?
Only asking as it would possibly affect wear marks on the bearings if the carriers were in any way out of true.
Lead-Indium is the quoted material for bearings on the D1 engines, but some of the pictures look like copper-lead material showing through the tin-lead running in layer on the old bearings. I didn't go right back 50 pages to get all of the history, so apologies if I am getting out of line with what has been said already.
The new bearings do look a little strange in terms of their wear patterns, and if that is only turning by hand, then there is definitely a problem, you shouldn't get anything like that on new stuff, bearing in mind that if the crank hasn't been reground it will be slightly undersize anyway.
I've seen Scania truck engines with 100k+ miles on that have just about gone through the running in layer and starting to run on the copper-lead, so wear rates are quite low on decent sized bearings with good oil filtration. Our son's V8 D2 engine is looking slightly worn, but not showing anything like those pressure marks.
Peter