I know it can take some time to track down an odd noise, plenty of places for them to come from in a landy drive system. Try running without front prop and see if it goes away, you will then know if worth getting into front housing.
^^^ Wot he said - take props off, one at a time, and see where that leads you
If you're fitting new output seals, then, for the minimal extra cost, I'd fit new output flanges too - IME, the br*part ones are fine .....