Most obvious checks would be
* to check that you're getting 4 bar of fuel pressure at the FPR (left side rear of head as you look at the engine), if you don't then the pump isn't working properly - they can 'part fail'.
* get some plumbers bungs, fit a tyre valve to one, and bung the intake where the hose attaches to the EGR (bung the hose, not the EGR), put the bung with valve at the end of the hose that connects to the turbo, then pump it up with a bike pump that has a pressure gauge and see if you're losing boost, could be a holed pipe, intercooler, etc.
* does it have a DPF in the downpipe? Could've become clogged somehow which will seriously limit performance - disconnect the downpipe from the turbo and noisily test if things improve...
* get someone with diags to check the idle injector balances, they will be all over the shop if there's any issues with injector sealing
* check the injector lash adjusters are timed correctly - there's a line with a number on the back of the cam sprocket that aligns with a lug on the head, each number corresponds to the lobe being at full lift for the corresponding injector - the lash needs to be fully tightened then backed off one turn before tightening the lock nut.
* checking the timing is a bit more involved, because you need to be able to see that the coloured links align on the crank sprocket/chain & cam pulley/chain - all the timing pins do is lock it all in place.
All the above won't cost much to do but will help narrow down where any issue could be.