Have you tryed making your repair plates 5 to 10 mm bigger all round, by doing this is will make welding so much easier. when you butt weld 2 pieces together you can only weld a short distance before the heat builds up and you burn through. By making the repait plate larger you can now weld on the flat surface of the repair plate and just catch the edge of the original structure and you with have so much more control over the weld.
The reason your welds are so proud is that in order to butt weld your having to produce a cold weld if that makes sense. The ideal weld looks the same either side, Learning to weld on the job is difficult but learning to weld thin material verticaly is a nightmare. I admire what your doing and you must have a huge sense of acheivement.
Colin.