"does it push up flat with the roof, mine doesnt so i think it may be a similar issue, it works and doesnt leak tho "

by removing the 2 cover strips(tilt up roof, slide cover strips backwards, and off) and slightly undoing, the 4 torx screws, put sunroof down into closed position, you can then adjust, how the sunroof sits in its closed position, when right, tighten torx screws and replace covers.
my problem is where exactly is the correct position, glass level with metalwork, or top of rubber level with metalwork?